MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:952.4 nTPM
HPA Brain:948.9 nTPM
GTEx:952.4 nTPM
FANTOM5:980.4 Scaled Tags Per Million
Pig:1115.3 nTPM
Mouse:537.0 nTPM
Allen mouse:11.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 948.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 727.4
2586 Male, age 75, left hemisphere 979.7
2666 Male, age 74, left hemisphere 936.1
1870 Female, age 42, unknown 836.8
2828 Female, age 72, unknown 765.2
2411 Female, age 72, unknown 712.3
1830 Male, age 51, unknown 700.9
1833 Male, age 53, unknown 698.7
1827 Male, age 72, unknown 644.2
2219 Male, age 76, both hemispheres 525.9
2019 Male, age 18, unknown 474.4
Dorsal raphe nucleus
nTPM: 772.3
2750 Male, age 76, both hemispheres 903.2
2047 Male, age 72, unknown 891.2
1828 Male, age 53, unknown 706.6
2016 Female, age 72, unknown 702.4
2298 Female, age 72, unknown 658.2
Inferior colliculus
nTPM: 537.7
2849 Male, age 72, unknown 616.6
1890 Male, age 53, unknown 557.0
1848 Female, age 42, unknown 553.6
2097 Female, age 72, unknown 423.7
Median raphe nucleus
nTPM: 948.9
2220 Male, age 76, midline 948.9
Periaquaductal grey, anterior
nTPM: 658.5
1947 Male, age 18, unknown 683.4
1795 Male, age 51, unknown 666.6
2502 Female, age 75, unknown 625.6
Periaquaductal grey, dorsal
nTPM: 639.7
2850 Male, age 76, both hemispheres 730.6
1840 Male, age 53, unknown 701.3
2464 Female, age 72, unknown 583.8
1831 Male, age 72, unknown 543.2
Periaquaductal grey, lateral
nTPM: 602.6
2053 Male, age 18, unknown 723.8
2140 Male, age 76, both hemispheres 614.1
2272 Male, age 74, both hemispheres 469.9
Pretectal area
nTPM: 543.8
2825 Male, age 18, unknown 753.4
2407 Male, age 75, both hemispheres 615.0
1815 Male, age 53, unknown 583.2
2224 Female, age 72, unknown 580.2
2667 Female, age 75, unknown 580.2
1817 Female, age 42, unknown 529.6
1816 Male, age 51, unknown 527.3
1944 Female, age 72, unknown 486.1
2316 Male, age 76, right hemisphere 448.4
2007 Male, age 72, unknown 440.3
2273 Male, age 74, both hemispheres 438.3
Red nucleus
nTPM: 752.4
2769 Male, age 72, unknown 843.6
1865 Male, age 51, unknown 821.7
1821 Female, age 72, unknown 819.6
2227 Male, age 72, unknown 812.1
1904 Male, age 53, unknown 811.9
2588 Male, age 74, left hemisphere 803.6
2584 Male, age 75, left hemisphere 791.2
1954 Female, age 42, unknown 789.2
2725 Female, age 75, unknown 728.1
2503 Female, age 72, unknown 684.2
2823 Male, age 76, right hemisphere 658.7
2785 Male, age 18, unknown 465.0
Substantia nigra
nTPM: 748.5
2699 Male, age 18, unknown 1019.2
1916 Female, age 42, unknown 922.6
2583 Male, age 75, right hemisphere 826.9
1851 Male, age 51, unknown 805.8
2665 Male, age 74, both hemispheres 760.9
2241 Male, age 72, unknown 737.2
2590 Female, age 75, unknown 625.5
1889 Female, age 72, unknown 614.0
1941 Male, age 53, unknown 605.3
2409 Female, age 72, unknown 567.9
Superior colliculus
nTPM: 594.2
2664 Male, age 75, both hemispheres 795.3
2668 Female, age 75, unknown 684.8
2587 Male, age 74, left hemisphere 671.2
1913 Female, age 42, unknown 615.7
1796 Male, age 53, unknown 595.7
2261 Male, age 18, unknown 569.5
1839 Male, age 51, unknown 564.4
1995 Male, age 72, unknown 550.7
2087 Female, age 72, unknown 474.0
1895 Male, age 76, right hemisphere 420.5
Ventral tegmental area
nTPM: 833.8
2223 Female, age 72, unknown 1290.6
2021 Male, age 53, unknown 782.4
1915 Female, age 42, unknown 753.5
2410 Female, age 72, unknown 747.4
2218 Male, age 76, both hemispheres 718.0
1942 Male, age 51, unknown 711.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 952.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 952.4
Samples: 139

Max nTPM: 1910.4
Min nTPM: 257.5
Std nTPM: 276.4
Median nTPM: 909.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1910.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 1707.0
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 1652.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1619.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1597.6
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 1555.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1527.9
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 1492.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 1451.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 1431.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 1427.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 980.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 980.4
FF:10158-103A5 76 years, female 980.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1115.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 949.3
Samples: 4

Max nTPM: 1177.9
Min nTPM: 622.7
Sample A Female 1109.5
Sample B Female 622.7
Sample C Male 887.1
Sample D Male 1177.9
Midbrain
nTPM: 1115.3
Samples: 4

Max nTPM: 2574.2
Min nTPM: 497.8
Sample A Female 2574.2
Sample B Female 873.3
Sample C Male 515.8
Sample D Male 497.8
Periaqueductal gray
nTPM: 577.7
Samples: 3

Max nTPM: 648.6
Min nTPM: 536.0
Sample B Female 648.6
Sample C Male 536.0
Sample D Male 548.6
Superior colliculi
nTPM: 670.6
Samples: 4

Max nTPM: 803.6
Min nTPM: 404.8
Sample A Female 803.6
Sample B Female 404.8
Sample C Male 698.7
Sample D Male 775.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 537.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 537.0
Samples: 4

Max nTPM: 554.7
Min nTPM: 519.2
Sample A Male 546.7
Sample B Male 519.2
Sample C Female 527.4
Sample D Female 554.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 11.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.9
68193012 Antisense, RP_040928_01_B12, Mouse strain C57BL/6J (56 days, male) 17.1
70928292 Antisense, RP_050725_02_C07, Mouse strain C57BL/6J (56 days, male) 11.0
77414654 Antisense, RP_070205_01_H12, Mouse strain C57BL/6J (56 days, male) 7.7

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