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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:565.0 nTPM
HPA Brain:1083.0 nTPM
GTEx:565.0 nTPM
FANTOM5:3180.3 Scaled Tags Per Million
Pig:419.1 nTPM
Mouse:1148.8 nTPM
Allen mouse:23.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1083.0
Sample id Sample description nTPM
Amygdala
nTPM: 1083.0
2695 Female, age 67, right hemisphere 1162.5
2514 Male, age 75, right hemisphere 1146.4
2814 Male, age 76, right hemisphere 1132.0
2517 Female, age 94, left hemisphere 1095.1
1987 Female, age 91, left hemisphere 879.0
Basal amygdala
nTPM: 940.7
2609 Male, age 75, right hemisphere 1526.0
2110 Male, age 80, left hemisphere 1038.4
2243 Female, age 91, right hemisphere 903.7
2685 Female, age 94, left hemisphere 850.8
1955 Male, age 76, both hemispheres 803.2
2827 Female, age 67, right hemisphere 522.0
Central amygdala
nTPM: 1008.5
2826 Female, age 94, left hemisphere 1196.8
1905 Male, age 76, both hemispheres 1133.3
2515 Male, age 75, right hemisphere 1124.9
2239 Male, age 80, left hemisphere 917.9
2701 Female, age 91, right hemisphere 669.6
Corticomedial amygdala
nTPM: 883.3
2428 Male, age 75, right hemisphere 1189.8
2829 Male, age 80, left hemisphere 1022.0
2429 Female, age 94, left hemisphere 894.3
2242 Female, age 91, right hemisphere 850.2
2535 Female, age 67, right hemisphere 699.5
2240 Male, age 76, both hemispheres 644.0
Lateral amygdala
nTPM: 954.4
2516 Male, age 75, right hemisphere 1323.9
2534 Female, age 94, left hemisphere 1223.0
1883 Male, age 76, both hemispheres 1049.2
2256 Male, age 80, left hemisphere 855.2
2255 Female, age 91, right hemisphere 806.4
2830 Female, age 67, right hemisphere 468.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

565.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 565.0
Samples: 152

Max nTPM: 1208.2
Min nTPM: 75.3
Std nTPM: 224.2
Median nTPM: 571.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1208.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1198.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1154.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1104.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1067.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1004.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 976.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 955.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 914.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 906.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 889.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 854.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 853.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 852.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 844.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 834.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 817.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 809.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 804.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 801.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 798.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 792.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 783.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 779.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 759.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 754.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 749.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 743.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 742.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 741.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 739.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 726.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 720.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 717.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 715.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 712.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 709.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 708.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 706.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 705.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 703.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 702.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 700.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 688.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 686.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 682.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 682.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 681.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 679.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 674.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 673.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 670.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 654.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 648.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 648.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 641.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 640.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 633.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 630.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 627.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 622.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 620.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 617.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 602.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 601.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 600.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 597.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 595.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 594.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 586.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 584.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 581.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 581.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 580.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 574.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 572.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 571.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 570.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 569.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 566.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 566.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 555.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 551.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 538.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 538.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 529.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 522.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 520.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 518.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 516.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 516.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 510.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 509.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 509.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 508.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 487.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 484.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 467.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 457.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 455.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 455.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 450.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 449.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 448.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 445.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 441.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 439.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 438.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 435.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 433.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 420.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 411.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 393.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 392.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 390.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 377.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 374.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 365.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 356.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 353.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 351.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 349.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 346.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 345.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 339.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 337.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 335.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 333.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 317.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 303.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 301.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 300.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 299.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 299.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 297.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 296.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 285.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 285.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 278.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 270.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 268.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 257.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 242.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 221.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 220.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 219.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 204.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 156.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 149.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 147.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 99.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 75.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3180.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 3180.3
FF:10151-102I7 76 years, female 3180.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

419.1
Pig sample Sample description nTPM
Amygdala
nTPM: 419.1
Samples: 4

Max nTPM: 546.1
Min nTPM: 344.5
Sample A Female 546.1
Sample B Female 344.5
Sample C Male 388.6
Sample D Male 397.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1148.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 1148.8
Samples: 4

Max nTPM: 1500.4
Min nTPM: 1013.0
Sample A Male 1068.2
Sample B Male 1013.4
Sample C Female 1500.4
Sample D Female 1013.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

23.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 23.9
393211 Antisense, RP_040804_02_D11, Mouse strain C57BL/6J (56 days, male) 24.4
70927826 Antisense, RP_050725_01_B02, Mouse strain C57BL/6J (56 days, male) 23.5

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