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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:982.1 nTPM
FANTOM5:2004.3 Scaled Tags Per Million
Pig:890.9 nTPM
Allen mouse:19.0 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

982.1
Sample id Sample description nTPM
Area postrema
nTPM: 770.6
2306 Male, age 80, both hemispheres 877.3
2799 Male, age 61, both hemispheres 777.0
2054 Male, age 76, both hemispheres 657.4
Dorsal medullary reticular nucleus
nTPM: 707.7
2088 Male, age 76, both hemispheres 852.4
2040 Female, age 85, both hemispheres 708.9
2373 Male, age 61, both hemispheres 561.9
Dorsal motor vagal complex
nTPM: 952.5
2797 Male, age 61, both hemispheres 1580.2
2185 Male, age 76, both hemispheres 1341.1
2844 Male, age 55, unknown 972.6
2643 Male, age 74, both hemispheres 946.3
2000 Male, age 74, unknown 876.7
2133 Female, age 91, both hemispheres 729.9
2813 Female, age 72, unknown 705.6
2807 Female, age 85, both hemispheres 467.9
Gigantocellular reticular nuclei, medullary
nTPM: 632.9
2022 Male, age 76, right hemisphere 698.6
2314 Male, age 61, both hemispheres 689.2
2462 Male, age 74, both hemispheres 628.8
1876 Female, age 85, both hemispheres 626.1
2387 Female, age 91, both hemispheres 603.1
2310 Male, age 80, both hemispheres 551.8
Gigantocellular reticular nuclei, pars
nTPM: 694.7
2168 Male, age 76, both hemispheres 936.2
2084 Female, age 85, both hemispheres 780.6
2336 Male, age 61, both hemispheres 684.1
2330 Male, age 80, both hemispheres 560.6
2706 Male, age 80, both hemispheres 512.2
Inferior olive
nTPM: 982.1
2563 Male, age 74, both hemispheres 1456.5
2085 Female, age 85, both hemispheres 1228.7
2628 Female, age 91, both hemispheres 938.4
2379 Male, age 80, both hemispheres 674.7
2178 Male, age 61, both hemispheres 612.0
Lateral medullary reticular nucleus
nTPM: 715.8
2804 Female, age 91, both hemispheres 880.3
2044 Male, age 76, both hemispheres 874.1
2190 Female, age 85, both hemispheres 697.1
2374 Male, age 61, both hemispheres 622.4
2305 Male, age 74, both hemispheres 615.2
2852 Male, age 80, both hemispheres 605.6
Medial olivary nucleus
nTPM: 634.6
2138 Female, age 91, both hemispheres 1148.4
2851 Male, age 80, both hemispheres 510.5
1962 Male, age 76, both hemispheres 483.2
1943 Male, age 61, both hemispheres 396.2
Medial vestibular nucleus
nTPM: 875.5
2624 Male, age 61, both hemispheres 1068.9
2093 Male, age 80, both hemispheres 994.6
2743 Female, age 85, both hemispheres 816.6
2801 Male, age 74, both hemispheres 812.9
2134 Male, age 76, both hemispheres 784.7
2803 Female, age 91, both hemispheres 775.3
Motor hypoglossal nucleus
nTPM: 655.2
2125 Female, age 91, both hemispheres 883.2
2461 Male, age 61, both hemispheres 669.0
2277 Male, age 76, both hemispheres 615.9
2182 Male, age 80, both hemispheres 560.1
2132 Female, age 85, both hemispheres 548.0
Nucleus ambiguus
nTPM: 729.1
2071 Male, age 76, both hemispheres 759.8
2096 Female, age 85, both hemispheres 698.3
Nucleus cuneatus
nTPM: 975.1
2100 Male, age 76, both hemispheres 1471.4
2131 Male, age 76, both hemispheres 1446.5
2564 Male, age 74, both hemispheres 1302.8
2562 Male, age 61, both hemispheres 1066.6
2805 Female, age 91, both hemispheres 1020.8
2376 Male, age 61, both hemispheres 743.4
2381 Male, age 80, both hemispheres 618.7
2380 Male, age 80, both hemispheres 604.1
2808 Female, age 85, both hemispheres 501.8
Nucleus gracilis
nTPM: 782.8
2627 Male, age 74, both hemispheres 1053.0
2299 Female, age 85, both hemispheres 762.7
2382 Male, age 80, both hemispheres 532.7
Nucleus raphe obscurus
nTPM: 555.2
2845 Female, age 85, midline 558.5
2800 Male, age 61, midline 557.9
2142 Male, age 76, midline 549.2
Nucleus raphe pallidus
nTPM: 503.2
2183 Male, age 80, midline 619.7
2145 Male, age 76, midline 560.5
1924 Male, age 61, midline 329.3
Nucleus tractus solitarii
nTPM: 638.3
2656 Male, age 76, both hemispheres 720.6
2191 Female, age 85, both hemispheres 680.6
2144 Female, age 91, right hemisphere 632.4
2307 Male, age 80, both hemispheres 519.7
Parvicellular reticular nuclei
nTPM: 697.4
2095 Male, age 76, both hemispheres 781.2
2119 Male, age 80, both hemispheres 741.0
2558 Male, age 74, both hemispheres 570.2
Parvicellular reticular nuclei, medullary
nTPM: 753.4
2091 Female, age 85, both hemispheres 801.5
2189 Female, age 91, both hemispheres 774.2
2181 Male, age 80, left hemisphere 684.5
Peritrigeminal nucleus
nTPM: 816.4
2136 Male, age 76, both hemispheres 874.1
2067 Female, age 85, both hemispheres 872.8
2179 Male, age 61, both hemispheres 702.2
Prepositus hypoglossal nucleus
nTPM: 851.7
2086 Male, age 80, both hemispheres 943.3
2855 Female, age 85, right hemisphere 760.1
Spinal trigeminal nucleus, caudal
nTPM: 836.6
2447 Male, age 76, both hemispheres 1340.9
2390 Female, age 91, both hemispheres 731.5
2642 Male, age 74, both hemispheres 716.6
2308 Male, age 80, both hemispheres 703.9
2312 Male, age 61, both hemispheres 689.9
Spinal trigeminal nucleus, interpolar
nTPM: 797.5
2066 Male, age 76, right hemisphere 1001.8
2625 Male, age 61, both hemispheres 985.0
2389 Female, age 91, both hemispheres 749.6
2033 Male, age 80, both hemispheres 637.7
2386 Female, age 85, both hemispheres 613.4
Spinal vestibular nucleus
nTPM: 704.9
2186 Female, age 91, both hemispheres 794.1
2748 Male, age 76, both hemispheres 771.1
2796 Male, age 61, both hemispheres 763.7
2806 Female, age 85, both hemispheres 717.0
2780 Male, age 80, both hemispheres 668.3
2384 Male, age 74, both hemispheres 515.1
Superior vestibular nucleus
nTPM: 794.2
2061 Male, age 76, both hemispheres 891.2
2383 Male, age 74, both hemispheres 821.7
2015 Male, age 80, both hemispheres 669.7
Ventral medullary reticular nucleus
nTPM: 630.1
2060 Male, age 76, both hemispheres 673.8
2372 Male, age 61, both hemispheres 586.4
Ventrolateral medulla, A1-C1 cell groups
nTPM: 791.0
2302 Female, age 91, both hemispheres 1056.8
1986 Male, age 76, both hemispheres 898.1
2741 Female, age 85, both hemispheres 741.6
2180 Male, age 61, both hemispheres 666.6
2118 Male, age 80, both hemispheres 591.9

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2004.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 2004.3
FF:10038-101F2 18-64 years, mixed 2715.5
FF:10174-103C3 60 years, female 1793.9
FF:10155-103A2 76 years, female 1503.5

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

890.9
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 890.9
Samples: 4

Max nTPM: 1031.5
Min nTPM: 752.1
Sample A Female 752.1
Sample B Female 932.6
Sample C Male 1031.5
Sample D Male 847.5

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

19.0
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 19.0
70927826 Antisense, RP_050725_01_B02, Mouse strain C57BL/6J (56 days, male) 20.9
393211 Antisense, RP_040804_02_D11, Mouse strain C57BL/6J (56 days, male) 17.1

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