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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:456.8 nTPM
GTEx:456.8 nTPM
FANTOM5:2086.8 Scaled Tags Per Million
Pig:624.9 nTPM
Mouse:1184.1 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

456.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 456.8
Samples: 105

Max nTPM: 1434.6
Min nTPM: 11.9
Std nTPM: 315.4
Median nTPM:
352_1 62 years, male 1434.6
356_1 87 years, female 1314.8
163_1 78 years, male 1161.4
354_1 81 years, female 1115.2
319_1 81 years, male 1063.2
353_1 82 years, female 1046.7
355_1 70 years, female 1014.6
386_1 76 years, male 955.7
377_1 82 years, female 939.2
172_1 72 years, female 924.7
351_1 91 years, male 886.3
350_1 84 years, female 873.0
218_1 71 years, female 813.6
349_1 83 years, male 796.6
292_1 71 years, male 796.0
376_1 75 years, female 789.6
394_1 75 years, female 786.1
243_1 75 years, male 765.7
177_1 74 years, male 758.3
452_1 88 years, female 755.2
506_1 65 years, male 755.1
320_1 89 years, female 740.7
251_1 78 years, male 718.7
503_1 68 years, male 709.0
425_1 59 years, female 697.0
335_1 73 years, female 694.2
293_1 68 years, female 682.6
517_1 88 years, male 649.8
321_1 62 years, female 626.3
286_1 68 years, female 616.7
237_1 82 years, male 608.4
389_1 86 years, female 606.7
480_1 63 years, male 600.5
406_1 79 years, male 594.2
6_1 73 years, female 566.4
295_1 61 years, female 553.9
384_1 83 years, male 542.1
189_1 76 years, male 529.6
264_1 73 years, female 528.9
348_1 84 years, male 526.3
447_1 81 years, male 525.4
318_1 68 years, male 522.1
322_1 76 years, male 504.6
379_1 60 years, male 503.7
316_1 62 years, male 482.7
375_1 74 years, female 481.5
526_1 61 years, male 464.2
99_1 64 years, male 446.7
173_1 67 years, male 441.4
291_1 76 years, male 436.0
404_1 82 years, female 434.7
405_1 91 years, male 425.1
217_1 76 years, male 413.8
229_1 69 years, female 411.5
115_1 83 years, male 410.4
317_1 60 years, male 405.0
153_1 70 years, female 398.9
9_1 66 years, female 396.9
468_1 89 years, male 380.5
137_1 83 years, male 349.0
396_1 62 years, male 325.5
254_1 77 years, female 324.9
4_1 88 years, female 322.8
2_1 77 years, female 310.1
246_1 77 years, male 309.0
18_1 88 years, male 296.9
518_1 75 years, female 290.3
265_1 87 years, male 287.0
145_1 84 years, male 276.9
35_1 74 years, female 269.9
17_1 71 years, male 263.1
266_1 85 years, male 261.7
347_1 72 years, male 258.7
126_1 63 years, male 231.1
120_1 70 years, female 227.1
288_1 66 years, female 225.7
109_1 81 years, female 216.7
42_1 85 years, male 208.4
117_1 61 years, male 180.1
41_1 94 years, female 174.1
314_1 67 years, male 168.9
311_1 78 years, male 158.5
324_1 76 years, male 153.2
162_1 79 years, female 152.9
81_1 67 years, male 141.7
313_1 79 years, female 137.0
307_1 66 years, female 134.3
499_1 55 years, female 133.5
32_1 67 years, male 126.4
142_1 61 years, female 126.4
315_1 62 years, female 102.5
139_1 64 years, female 100.3
43_1 64 years, female 90.4
119_1 70 years, female 69.2
415_1 77 years, female 68.7
414_1 84 years, female 67.1
89_1 63 years, male 65.7
501_1 88 years, male 60.0
466_1 57 years, female 58.3
308_1 70 years, female 56.0
149_1 88 years, male 50.7
495_1 57 years, female 47.1
413_1 59 years, female 36.1
490_1 67 years, female 16.0
491_1 89 years, female 11.9
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2086.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 2086.8
FF:10030-101E3 24-65 years, mixed 2086.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

624.9
Pig sample Sample description nTPM
Retina
nTPM: 624.9
Samples: 4

Max nTPM: 734.2
Min nTPM: 524.3
Sample A Female 534.3
Sample B Female 734.2
Sample C Male 706.7
Sample D Male 524.3

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1184.1
Mouse sample Sample description nTPM
Retina
nTPM: 1184.1
Samples: 4

Max nTPM: 1889.3
Min nTPM: 723.4
Sample A Male 1067.6
Sample B Male 1056.0
Sample C Female 1889.3
Sample D Female 723.4

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