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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:257.0 nTPM
HPA Brain:1015.0 nTPM
GTEx:257.0 nTPM
FANTOM5:1467.0 Scaled Tags Per Million
Pig:1007.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1015.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 1015.0
1981 Female, age 72, midline 1236.7
2565 Male, age 75, midline 1185.7
2194 Female, age 79, both hemispheres 1035.0
2816 Male, age 47, midline 814.1
2048 Male, age 55, midline 803.6
Cervical spinal cord, dorsal horn
nTPM: 785.6
2721 Male, age 90, both hemispheres 907.0
2173 Female, age 72, unknown 896.7
2069 Male, age 47, both hemispheres 806.0
2297 Male, age 75, both hemispheres 800.0
1877 Male, age 55, unknown 661.1
2296 Male, age 66, both hemispheres 642.8
Cervical spinal cord, ventral horn
nTPM: 934.6
2098 Female, age 72, unknown 1168.4
2295 Male, age 66, both hemispheres 1143.2
2809 Male, age 90, both hemispheres 902.6
2068 Male, age 55, unknown 866.8
2480 Male, age 75, both hemispheres 825.0
2820 Female, age 79, both hemispheres 701.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

257.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 257.0
Samples: 159

Max nTPM: 586.7
Min nTPM: 117.2
Std nTPM: 78.4
Median nTPM: 247.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 586.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 534.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 449.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 441.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 439.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 438.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 421.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 419.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 408.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 402.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 385.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 377.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 377.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 369.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 357.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 353.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 352.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 348.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 347.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 345.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 339.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 337.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 336.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 335.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 333.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 333.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 319.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 318.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 315.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 312.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 309.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 306.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 305.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 304.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 301.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 300.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 299.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 299.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 298.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 298.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 296.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 296.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 292.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 291.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 289.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 287.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 286.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 283.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 282.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 281.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 279.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 278.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 277.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 275.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 273.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 272.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 271.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 269.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 267.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 267.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 262.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 262.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 262.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 261.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 261.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 261.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 260.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 260.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 259.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 258.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 256.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 255.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 253.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 252.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 251.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 251.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 250.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 247.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 247.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 247.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 246.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 246.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 244.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 242.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 242.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 241.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 240.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 239.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 238.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 235.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 233.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 229.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 229.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 229.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 228.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 227.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 227.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 227.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 226.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 225.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 224.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 220.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 220.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 219.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 219.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 219.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 216.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 216.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 215.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 215.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 214.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 213.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 212.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 211.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 210.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 210.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 208.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 207.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 207.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 206.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 204.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 201.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 198.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 197.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 197.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 194.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 191.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 190.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 190.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 190.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 190.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 188.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 188.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 187.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 186.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 184.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 183.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 182.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 181.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 180.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 180.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 177.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 175.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 173.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 169.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 160.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 158.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 157.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 157.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 153.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 152.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 150.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 138.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 136.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 133.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 123.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 122.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 119.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 117.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1467.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1467.0
FF:10181-103D1 60 years, female 1981.1
FF:10159-103A6 76 years, female 952.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1007.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 622.1
Samples: 4

Max nTPM: 763.9
Min nTPM: 488.8
Sample A Female 741.1
Sample B Female 494.4
Sample C Male 488.8
Sample D Male 763.9
Ventral spinal cord
nTPM: 1007.4
Samples: 4

Max nTPM: 1164.1
Min nTPM: 778.9
Sample A Female 1035.5
Sample B Female 1050.9
Sample C Male 1164.1
Sample D Male 778.9

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