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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:351.3 nTPM
HPA Brain:119.7 nTPM
GTEx:351.3 nTPM
FANTOM5:151.0 Scaled Tags Per Million
Pig:8.2 nTPM
Mouse:801.0 nTPM
Allen mouse:15.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

119.7
Sample id Sample description nTPM
Amygdala
nTPM: 119.7
2814 Male, age 76, right hemisphere 159.2
2514 Male, age 75, right hemisphere 122.5
1987 Female, age 91, left hemisphere 118.7
2695 Female, age 67, right hemisphere 106.7
2517 Female, age 94, left hemisphere 91.2
Basal amygdala
nTPM: 91.5
2609 Male, age 75, right hemisphere 110.3
2110 Male, age 80, left hemisphere 108.6
1955 Male, age 76, both hemispheres 95.6
2685 Female, age 94, left hemisphere 87.0
2243 Female, age 91, right hemisphere 86.4
2827 Female, age 67, right hemisphere 61.2
Central amygdala
nTPM: 101.0
1905 Male, age 76, both hemispheres 125.1
2826 Female, age 94, left hemisphere 111.0
2515 Male, age 75, right hemisphere 94.3
2239 Male, age 80, left hemisphere 90.0
2701 Female, age 91, right hemisphere 84.6
Corticomedial amygdala
nTPM: 91.9
2829 Male, age 80, left hemisphere 112.1
2428 Male, age 75, right hemisphere 102.1
2240 Male, age 76, both hemispheres 97.2
2242 Female, age 91, right hemisphere 96.8
2429 Female, age 94, left hemisphere 89.7
2535 Female, age 67, right hemisphere 53.7
Lateral amygdala
nTPM: 88.2
1883 Male, age 76, both hemispheres 126.8
2516 Male, age 75, right hemisphere 113.4
2534 Female, age 94, left hemisphere 87.4
2255 Female, age 91, right hemisphere 69.5
2256 Male, age 80, left hemisphere 66.5
2830 Female, age 67, right hemisphere 65.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

351.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 351.3
Samples: 152

Max nTPM: 1024.0
Min nTPM: 163.4
Std nTPM: 138.1
Median nTPM: 327.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1024.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 948.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 948.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 902.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 654.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 623.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 569.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 545.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 544.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 537.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 535.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 531.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 524.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 514.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 500.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 492.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 481.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 476.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 470.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 463.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 459.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 449.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 447.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 445.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 439.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 437.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 436.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 434.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 433.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 426.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 423.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 417.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 415.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 398.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 398.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 397.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 397.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 395.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 392.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 390.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 387.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 386.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 386.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 384.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 383.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 380.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 380.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 379.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 379.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 376.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 374.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 374.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 371.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 369.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 364.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 358.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 356.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 356.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 354.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 354.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 354.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 353.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 348.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 345.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 344.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 341.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 341.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 340.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 340.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 337.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 335.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 333.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 333.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 331.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 329.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 329.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 326.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 325.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 324.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 324.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 320.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 320.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 318.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 318.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 317.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 315.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 314.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 308.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 304.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 304.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 301.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 293.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 292.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 292.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 291.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 291.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 291.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 289.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 289.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 283.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 282.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 282.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 281.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 281.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 279.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 276.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 276.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 275.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 274.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 270.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 268.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 267.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 264.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 264.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 263.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 262.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 261.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 261.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 258.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 256.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 253.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 249.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 247.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 243.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 240.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 240.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 237.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 233.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 233.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 232.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 230.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 229.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 227.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 227.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 226.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 222.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 221.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 221.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 220.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 217.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 212.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 210.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 206.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 202.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 198.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 195.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 193.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 193.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 193.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 188.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 186.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 163.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

151.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 151.0
FF:10151-102I7 76 years, female 151.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

8.2
Pig sample Sample description nTPM
Amygdala
nTPM: 8.2
Samples: 4

Max nTPM: 10.7
Min nTPM: 5.4
Sample A Female 5.4
Sample B Female 6.4
Sample C Male 10.7
Sample D Male 10.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

801.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 801.0
Samples: 4

Max nTPM: 818.9
Min nTPM: 762.5
Sample A Male 762.5
Sample B Male 817.5
Sample C Female 818.9
Sample D Female 805.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

15.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.6
67765702 Antisense, RP_040916_01_D05, Mouse strain C57BL/6J (56 days, male) 17.0
77371785 Antisense, RP_070116_01_C02, Mouse strain C57BL/6J (56 days, male) 14.2

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