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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:250.0 nTPM
HPA:250.0 nTPM
GTEx:217.4 nTPM
FANTOM5:372.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA042777Antibody HPA048459
Glandular cells HighHigh



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

250.0
overview
Male, age 65
Small intestine sample 232
nTPM: 264.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 270.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 203.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 261.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

217.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 217.4
Samples: 187

Max nTPM: 525.1
Min nTPM: 100.9
Std nTPM: 70.7
Median nTPM: 214.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 525.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 392.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 381.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 360.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 356.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 356.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 354.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 347.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 339.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 338.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 332.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 331.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 328.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 325.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 320.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 319.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 314.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 311.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 308.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 307.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 307.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 305.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 305.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 304.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 299.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 298.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 296.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 296.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 290.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 290.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 287.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 283.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 281.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 276.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 275.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 275.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 274.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 272.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 270.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 270.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 270.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 269.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 269.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 268.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 267.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 267.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 265.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 265.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 264.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 264.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 263.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 263.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 263.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 260.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 259.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 259.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 259.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 257.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 255.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 253.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 252.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 250.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 248.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 244.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 244.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 243.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 242.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 239.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 235.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 235.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 234.8
GTEX-1192X-2526-SM-59868 50-59 years, male 233.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 233.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 231.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 231.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 230.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 230.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 229.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 227.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 225.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 225.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 223.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 221.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 221.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 221.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 220.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 218.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 217.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 216.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 215.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 215.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 215.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 214.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 214.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 212.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 209.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 208.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 208.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 208.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 207.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 206.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 206.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 204.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 204.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 203.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 202.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 201.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 199.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 197.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 197.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 194.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 193.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 191.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 190.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 190.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 188.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 187.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 186.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 185.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 185.1
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 182.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 182.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 180.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 179.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 178.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 175.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 173.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 173.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 171.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 168.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 167.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 166.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 164.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 163.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 162.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 162.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 161.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 159.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 158.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 158.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 158.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 157.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 157.3
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 156.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 155.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 154.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 153.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 153.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 151.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 151.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 150.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 150.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 150.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 147.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 146.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 144.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 143.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 139.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 138.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 138.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 138.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 138.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 137.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 136.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 131.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 131.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 131.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 131.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 130.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 125.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 125.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 124.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 124.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 123.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 119.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 118.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 117.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 116.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 116.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 115.8
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 115.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 115.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 112.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 110.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 104.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 104.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 100.9
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

372.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 372.3
FF:10024-101D6 15,40,85 years, mixed 372.3

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