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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
59860.8
nTPM
HPA Brain:
24289.0
nTPM
GTEx:
59860.8
nTPM
Pig:
35593.9
nTPM
Mouse:
15557.1
nTPM
HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
24289.0
Sample id
Sample description
nTPM
Hippocampus nTPM: 22873.2
2621
Female, age 67, right hemisphere
35927.5
2529
Female, age 94, left hemisphere
32293.3
1855
Male, age 76, left hemisphere
24081.1
2148
Female, age 91, left hemisphere
19397.2
1911
Female, age 85, right hemisphere
15685.7
1898
Male, age 80, left hemisphere
9854.3
Dentate gyrus nTPM: 21170.4
2530
Female, age 94, left hemisphere
41079.1
2531
Female, age 67, both hemispheres
32849.5
2246
Female, age 85, both hemispheres
21143.4
2010
Male, age 76, both hemispheres
12999.5
2528
Male, age 74, both hemispheres
10504.1
1927
Female, age 91, both hemispheres
8446.5
Entorhinal gyrus nTPM: 15169.1
2686
Male, age 75, right hemisphere
28559.7
2613
Female, age 94, left hemisphere
18337.9
2117
Female, age 91, right hemisphere
15442.0
1938
Female, age 85, left hemisphere
10636.2
1787
Male, age 76, left hemisphere
10149.2
2764
Male, age 80, right hemisphere
7889.8
Hippocampus, CA1 nTPM: 12966.7
2527
Male, age 74, both hemispheres
18426.5
2045
Male, age 76, both hemispheres
15452.0
1873
Female, age 85, both hemispheres
12906.9
2749
Male, age 80, left hemisphere
10786.0
2082
Female, age 91, right hemisphere
7262.2
Hippocampus, CA2 nTPM: 13657.3
2437
Female, age 94, left hemisphere
31170.7
1892
Male, age 76, both hemispheres
14374.3
1940
Female, age 85, left hemisphere
13461.7
2113
Female, age 91, right hemisphere
10351.1
1963
Male, age 80, left hemisphere
6567.3
2249
Male, age 74, both hemispheres
6018.4
Hippocampus, CA3 nTPM: 24289.0
2861
Female, age 67, both hemispheres
73836.1
2620
Female, age 94, left hemisphere
18839.8
1867
Male, age 76, both hemispheres
15430.0
2137
Male, age 80, left hemisphere
13928.3
1891
Female, age 85, both hemispheres
12441.0
2436
Male, age 74, both hemispheres
11258.8
Parahippocampal cortex nTPM: 19071.3
2245
Female, age 91, both hemispheres
38236.4
2622
Female, age 67, right hemisphere
32857.7
2692
Male, age 74, both hemispheres
26242.7
2532
Female, age 72, left hemisphere
22921.5
2018
Male, age 76, both hemispheres
16196.0
2693
Female, age 94, both hemispheres
14185.3
2250
Female, age 67, right hemisphere
11400.1
1850
Male, age 80, both hemispheres
10379.6
1933
Female, age 85, both hemispheres
10132.9
1990
Female, age 91, right hemisphere
8160.6
Perirhinal gyrus nTPM: 9342.2
2848
Male, age 76, right hemisphere
12489.7
2521
Female, age 94, right hemisphere
10460.5
1841
Female, age 85, right hemisphere
9953.9
1847
Female, age 91, left hemisphere
6911.5
1794
Male, age 80, right hemisphere
6895.3
Subiculum nTPM: 17691.9
2438
Female, age 94, left hemisphere
39493.2
2619
Male, age 74, both hemispheres
18230.0
2042
Male, age 76, both hemispheres
17057.5
1901
Male, age 80, both hemispheres
13291.7
1977
Female, age 85, both hemispheres
10190.3
2729
Female, age 91, right hemisphere
7888.7
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
59860.8
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 59860.8
Samples: 197
Max nTPM: 243902.5
Min nTPM: 4305.8
Std nTPM: 46106.4
Median nTPM: 43001.1
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
