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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
38171.1
nTPM
HPA Brain:
14256.2
nTPM
GTEx:
38171.1
nTPM
Pig:
29254.5
nTPM
SPINAL CORD - Annotated protein expression
Pending normal tissue analysis
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
14256.2
Sample id
Sample description
nTPM
Cervical spinal cord, central gray nTPM: 11406.6
2565
Male, age 75, midline
16643.0
2194
Female, age 79, both hemispheres
13377.3
2048
Male, age 55, midline
11350.8
2816
Male, age 47, midline
11282.3
1981
Female, age 72, midline
4379.7
Cervical spinal cord, dorsal horn nTPM: 8153.8
2721
Male, age 90, both hemispheres
19512.9
2297
Male, age 75, both hemispheres
9837.9
1877
Male, age 55, unknown
8129.5
2069
Male, age 47, both hemispheres
4632.7
2173
Female, age 72, unknown
3463.4
2296
Male, age 66, both hemispheres
3346.4
Cervical spinal cord, ventral horn nTPM: 14256.2
2480
Male, age 75, both hemispheres
30852.8
2820
Female, age 79, both hemispheres
22478.7
2068
Male, age 55, unknown
11236.5
2295
Male, age 66, both hemispheres
9909.5
2809
Male, age 90, both hemispheres
9101.6
2098
Female, age 72, unknown
1958.2
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
38171.1
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 38171.1
Samples: 159
Max nTPM: 261021.8
Min nTPM: 6605.7
Std nTPM: 38653.5
Median nTPM: 26136.1
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
