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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
52202.8
nTPM
HPA Brain:
32973.0
nTPM
GTEx:
52202.8
nTPM
Pig:
32044.5
nTPM
Mouse:
12915.6
nTPM
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
32973.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 24067.7
2586
Male, age 75, left hemisphere
41399.8
2219
Male, age 76, both hemispheres
34436.3
2666
Male, age 74, left hemisphere
34179.2
1870
Female, age 42, unknown
26227.8
1833
Male, age 53, unknown
23349.6
2828
Female, age 72, unknown
21121.8
1830
Male, age 51, unknown
19394.0
1827
Male, age 72, unknown
13994.2
2019
Male, age 18, unknown
13795.8
2411
Female, age 72, unknown
12778.8
Dorsal raphe nucleus nTPM: 14782.6
1828
Male, age 53, unknown
20908.7
2047
Male, age 72, unknown
18716.2
2750
Male, age 76, both hemispheres
15883.2
2016
Female, age 72, unknown
13435.0
2298
Female, age 72, unknown
4969.9
Inferior colliculus nTPM: 22832.1
2849
Male, age 72, unknown
42735.0
1890
Male, age 53, unknown
22299.2
1848
Female, age 42, unknown
18675.1
2097
Female, age 72, unknown
7619.0
Median raphe nucleus nTPM: 32973.0
2220
Male, age 76, midline
32973.0
Periaquaductal grey, anterior nTPM: 13084.8
2502
Female, age 75, unknown
14819.3
1795
Male, age 51, unknown
13833.2
1947
Male, age 18, unknown
10602.0
Periaquaductal grey, dorsal nTPM: 22691.8
2850
Male, age 76, both hemispheres
42849.5
2464
Female, age 72, unknown
17377.2
1840
Male, age 53, unknown
15418.0
1831
Male, age 72, unknown
15122.6
Periaquaductal grey, lateral nTPM: 11628.0
2140
Male, age 76, both hemispheres
16314.8
2053
Male, age 18, unknown
12488.2
2272
Male, age 74, both hemispheres
6080.9
Pretectal area nTPM: 17887.9
2667
Female, age 75, unknown
29684.7
1944
Female, age 72, unknown
24920.5
1817
Female, age 42, unknown
21941.6
1816
Male, age 51, unknown
21619.9
2007
Male, age 72, unknown
21346.5
1815
Male, age 53, unknown
20190.4
2825
Male, age 18, unknown
18506.5
2407
Male, age 75, both hemispheres
15000.4
2224
Female, age 72, unknown
9396.1
2316
Male, age 76, right hemisphere
8199.7
2273
Male, age 74, both hemispheres
5960.8
Red nucleus nTPM: 22862.8
2503
Female, age 72, unknown
29433.5
1865
Male, age 51, unknown
29145.4
2588
Male, age 74, left hemisphere
28435.0
2584
Male, age 75, left hemisphere
28327.0
1954
Female, age 42, unknown
23592.4
2823
Male, age 76, right hemisphere
22905.4
2725
Female, age 75, unknown
21209.1
2785
Male, age 18, unknown
19832.7
2769
Male, age 72, unknown
19755.2
2227
Male, age 72, unknown
19385.0
1904
Male, age 53, unknown
19131.3
1821
Female, age 72, unknown
13201.8
Substantia nigra nTPM: 24586.6
2699
Male, age 18, unknown
55435.9
2665
Male, age 74, both hemispheres
42221.2
1916
Female, age 42, unknown
30598.9
1941
Male, age 53, unknown
20802.3
1889
Female, age 72, unknown
19621.7
2583
Male, age 75, right hemisphere
18840.0
2241
Male, age 72, unknown
16343.9
2409
Female, age 72, unknown
15324.3
1851
Male, age 51, unknown
14778.6
2590
Female, age 75, unknown
11899.0
Superior colliculus nTPM: 17844.0
2664
Male, age 75, both hemispheres
32756.8
2587
Male, age 74, left hemisphere
21026.2
2087
Female, age 72, unknown
19631.9
1913
Female, age 42, unknown
17762.3
1895
Male, age 76, right hemisphere
15779.6
2668
Female, age 75, unknown
15685.2
1839
Male, age 51, unknown
15482.9
1995
Male, age 72, unknown
15384.4
1796
Male, age 53, unknown
13718.3
2261
Male, age 18, unknown
11212.5
Ventral tegmental area nTPM: 19166.8
2218
Male, age 76, both hemispheres
28821.1
2223
Female, age 72, unknown
22105.4
1942
Male, age 51, unknown
18627.7
1915
Female, age 42, unknown
15941.2
2021
Male, age 53, unknown
15654.3
2410
Female, age 72, unknown
13851.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
52202.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 52202.8
Samples: 139
Max nTPM: 214792.6
Min nTPM: 7057.4
Std nTPM: 40361.8
Median nTPM: 39359.8
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
