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  • MT-ND4L
BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:32207.6 nTPM
Pig:31774.8 nTPM
Mouse:16345.4 nTPM

THALAMUS - Annotated protein expression
Pending normal tissue analysis

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32207.6
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 25258.4
2497 Male, age 66, unknown 30811.8
2032 Female, age 42, unknown 22718.6
2396 Male, age 61, right hemisphere 22244.9
Centromedial thalamic nucleus
nTPM: 23902.2
2401 Male, age 76, right hemisphere 24623.4
2279 Female, age 85, left hemisphere 23180.9
Habenula
nTPM: 14876.6
1957 Male, age 80, both hemispheres 18011.4
2276 Male, age 66, unknown 17258.9
2252 Male, age 62, unknown 12980.9
2203 Male, age 61, left hemisphere 11255.4
Lateral geniculate body
nTPM: 27572.3
2857 Male, age 74, right hemisphere 51521.3
2659 Male, age 66, unknown 48618.9
2399 Male, age 61, left hemisphere 27283.1
2575 Female, age 94, right hemisphere 24461.5
1953 Male, age 62, unknown 23826.4
2035 Female, age 72, unknown 19555.1
2841 Male, age 80, both hemispheres 16308.3
2106 Female, age 67, right hemisphere 9003.4
Lateral thalamic nuclei
nTPM: 27320.5
2661 Female, age 72, unknown 58230.6
1903 Male, age 76, left hemisphere 28558.9
2577 Male, age 74, both hemispheres 21556.0
2573 Female, age 94, left hemisphere 21526.2
2765 Female, age 67, both hemispheres 6730.8
Medial dorsal thalamic nucleus
nTPM: 24161.7
2660 Female, age 72, unknown 44805.8
2572 Female, age 94, right hemisphere 38079.4
2576 Male, age 74, both hemispheres 28741.3
2498 Male, age 66, unknown 28732.9
2492 Male, age 75, right hemisphere 25103.8
1859 Male, age 76, both hemispheres 24048.1
2402 Female, age 67, both hemispheres 23864.9
2283 Male, age 80, right hemisphere 23259.7
2026 Male, age 62, unknown 18669.9
1930 Female, age 42, unknown 17395.7
1810 Male, age 48, unknown 17206.9
2039 Female, age 72, unknown 16615.5
1971 Male, age 61, right hemisphere 7577.7
Medial geniculate body
nTPM: 32207.6
2207 Male, age 80, right hemisphere 43491.5
2571 Male, age 75, right hemisphere 39529.2
2217 Female, age 72, unknown 36904.0
2657 Male, age 74, right hemisphere 32190.8
2650 Female, age 94, left hemisphere 30689.0
1811 Female, age 42, unknown 22157.3
2049 Male, age 76, both hemispheres 20491.5
Nucleus reuniens
nTPM: 23283.5
2210 Female, age 85, left hemisphere 32602.7
2205 Male, age 80, left hemisphere 26393.4
2212 Female, age 67, left hemisphere 10854.4
Nucleus rhomboideus
nTPM: 26347.0
2280 Female, age 85, left hemisphere 40495.6
2206 Male, age 80, both hemispheres 26957.4
2213 Female, age 67, left hemisphere 11588.0
Posterior thalamic nucleus
nTPM: 31763.2
2655 Male, age 74, right hemisphere 47155.4
2495 Female, age 67, right hemisphere 34046.7
2649 Female, age 94, both hemispheres 31747.4
2266 Male, age 76, right hemisphere 14103.4
Pulvinar
nTPM: 30733.4
2724 Male, age 74, right hemisphere 78538.1
2582 Female, age 72, unknown 40354.1
2214 Male, age 76, right hemisphere 30531.8
2496 Female, age 67, right hemisphere 29112.8
2398 Male, age 61, left hemisphere 28712.6
2499 Male, age 66, unknown 28226.7
1929 Male, age 48, unknown 24113.6
1899 Female, age 42, unknown 17666.2
1932 Male, age 80, right hemisphere 16989.8
1972 Male, age 62, unknown 13088.1
Subthalamic nucleus
nTPM: 20165.7
2658 Male, age 74, both hemispheres 36268.0
2216 Male, age 48, unknown 28472.6
2779 Female, age 42, unknown 21611.3
2282 Male, age 61, both hemispheres 18950.1
2406 Female, age 72, unknown 18384.0
2124 Male, age 62, unknown 14295.5
2275 Male, age 66, unknown 12107.6
2056 Female, age 72, unknown 11236.8
Ventral posterolateral thalamic nucleus
nTPM: 27069.3
2581 Female, age 72, unknown 52191.9
2570 Male, age 75, right hemisphere 32148.0
2397 Male, age 61, right hemisphere 22099.3
2578 Male, age 74, both hemispheres 21872.0
2197 Male, age 80, both hemispheres 18152.2
2740 Male, age 76, right hemisphere 15952.4
Ventral posteromedial thalamic nucleus
nTPM: 19120.2
2653 Male, age 74, both hemispheres 26821.1
2758 Male, age 80, both hemispheres 19988.3
2127 Male, age 76, right hemisphere 19060.2
2202 Male, age 61, left hemisphere 15530.6
2281 Male, age 75, right hemisphere 14200.9
Ventral thalamic nuclei
nTPM: 29240.3
2858 Female, age 72, unknown 59359.5
2204 Male, age 80, both hemispheres 44485.0
2580 Male, age 66, unknown 32720.7
1845 Male, age 48, unknown 25650.6
2652 Male, age 74, left hemisphere 23691.4
1860 Male, age 76, both hemispheres 22023.5
1912 Female, age 42, unknown 20317.7
2285 Male, age 62, unknown 19384.4
2291 Female, age 72, unknown 15529.5
Zona incerta
nTPM: 26620.5
2663 Female, age 72, unknown 45890.5
2403 Male, age 62, unknown 29444.5
2208 Male, age 80, right hemisphere 29177.9
2822 Male, age 74, right hemisphere 19394.2
2215 Male, age 66, unknown 9195.5

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

31774.8
Pig sample Sample description nTPM
Thalamus
nTPM: 31774.8
Samples: 4

Max nTPM: 43305.5
Min nTPM: 22084.4
Sample A Female 43305.5
Sample B Female 27226.2
Sample C Male 34482.9
Sample D Male 22084.4

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

16345.4
Mouse sample Sample description nTPM
Thalamus
nTPM: 16345.4
Samples: 4

Max nTPM: 17705.2
Min nTPM: 15057.5
Sample A Male 17298.6
Sample B Male 15057.5
Sample C Female 17705.2
Sample D Female 15320.2

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