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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2388.0 nTPM
HPA Brain:1849.6 nTPM
GTEx:2388.0 nTPM
FANTOM5:2706.5 Scaled Tags Per Million
Mouse:2525.6 nTPM
Allen mouse:4.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1849.6
Sample id Sample description nTPM
Amygdala
nTPM: 1849.6
2814 Male, age 76, right hemisphere 2431.9
2695 Female, age 67, right hemisphere 2004.4
2514 Male, age 75, right hemisphere 1700.1
1987 Female, age 91, left hemisphere 1641.2
2517 Female, age 94, left hemisphere 1470.4
Basal amygdala
nTPM: 1362.9
2609 Male, age 75, right hemisphere 1963.6
1955 Male, age 76, both hemispheres 1731.6
2110 Male, age 80, left hemisphere 1411.6
2685 Female, age 94, left hemisphere 1089.3
2243 Female, age 91, right hemisphere 1078.8
2827 Female, age 67, right hemisphere 902.4
Central amygdala
nTPM: 1760.8
1905 Male, age 76, both hemispheres 2344.6
2515 Male, age 75, right hemisphere 1902.8
2826 Female, age 94, left hemisphere 1684.4
2239 Male, age 80, left hemisphere 1512.9
2701 Female, age 91, right hemisphere 1359.3
Corticomedial amygdala
nTPM: 1190.1
2428 Male, age 75, right hemisphere 1408.1
2240 Male, age 76, both hemispheres 1377.9
2429 Female, age 94, left hemisphere 1260.3
2829 Male, age 80, left hemisphere 1221.0
2242 Female, age 91, right hemisphere 1003.7
2535 Female, age 67, right hemisphere 869.6
Lateral amygdala
nTPM: 1660.3
2516 Male, age 75, right hemisphere 2160.4
1883 Male, age 76, both hemispheres 2076.2
2256 Male, age 80, left hemisphere 1718.2
2534 Female, age 94, left hemisphere 1503.7
2255 Female, age 91, right hemisphere 1432.2
2830 Female, age 67, right hemisphere 1071.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2388.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 2388.0
Samples: 152

Max nTPM: 5728.3
Min nTPM: 69.8
Std nTPM: 939.1
Median nTPM: 2315.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 5728.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 5145.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 4730.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 4651.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 4514.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 4502.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 4338.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 4309.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 4111.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 4030.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 3894.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 3879.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 3841.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 3821.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 3777.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 3643.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 3433.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 3426.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 3374.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 3373.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 3354.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 3300.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 3272.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 3211.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 3154.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3131.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 3114.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 3112.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 3108.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 3093.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 3036.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 3007.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2981.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2886.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 2882.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 2881.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 2873.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2869.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 2859.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 2851.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 2812.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 2785.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 2782.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 2756.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 2752.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2735.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 2730.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2718.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 2707.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 2702.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 2698.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2687.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 2687.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 2676.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 2671.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 2660.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 2624.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 2604.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2600.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 2596.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 2581.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 2547.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 2528.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 2527.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 2496.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 2488.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 2482.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 2450.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 2430.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 2418.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 2402.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 2387.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 2349.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 2347.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 2342.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 2320.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 2311.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 2307.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 2293.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 2277.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 2267.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 2234.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 2230.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 2229.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 2222.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 2208.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 2174.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 2131.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 2130.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 2087.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 2086.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2072.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 2054.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 2048.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 2038.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 2014.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1968.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1924.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1921.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1898.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1892.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1875.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1852.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1844.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1835.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1824.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1785.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1780.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1771.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1769.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1762.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1762.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1757.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1739.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1728.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1667.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1660.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1654.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1644.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 1639.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1638.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1636.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1631.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1612.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1574.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1560.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1546.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1529.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1528.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1432.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1415.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1391.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1370.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1365.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1345.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1301.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1296.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1253.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1215.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1214.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1171.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1150.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1145.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1140.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1121.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1040.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1011.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 931.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 906.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 728.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 711.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 69.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2706.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 2706.5
FF:10151-102I7 76 years, female 2706.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2525.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 2525.6
Samples: 4

Max nTPM: 3387.0
Min nTPM: 1606.0
Sample A Male 3002.2
Sample B Male 2107.2
Sample C Female 1606.0
Sample D Female 3387.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.2
851 Antisense, RP_Baylor_102986, Mouse strain C57BL/6J (56 days, male) 4.2
852 Antisense, RP_Baylor_102986, Mouse strain C57BL/6J (56 days, male) 2.5

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