MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3289.6 nTPM
HPA Brain:2622.4 nTPM
GTEx:3289.6 nTPM
FANTOM5:6870.6 Scaled Tags Per Million
Mouse:3469.3 nTPM
Allen mouse:10.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 2622.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1915.6
2019 Male, age 18, unknown 2374.9
2828 Female, age 72, unknown 2347.1
1833 Male, age 53, unknown 2187.9
1870 Female, age 42, unknown 2153.7
2411 Female, age 72, unknown 2117.5
1830 Male, age 51, unknown 2046.8
2586 Male, age 75, left hemisphere 1822.5
2219 Male, age 76, both hemispheres 1446.8
1827 Male, age 72, unknown 1442.6
2666 Male, age 74, left hemisphere 1215.8
Dorsal raphe nucleus
nTPM: 1851.9
2750 Male, age 76, both hemispheres 2106.9
2016 Female, age 72, unknown 1922.7
2298 Female, age 72, unknown 1815.9
1828 Male, age 53, unknown 1760.4
2047 Male, age 72, unknown 1653.8
Inferior colliculus
nTPM: 1611.1
1890 Male, age 53, unknown 1637.8
1848 Female, age 42, unknown 1627.3
2849 Male, age 72, unknown 1610.1
2097 Female, age 72, unknown 1569.3
Median raphe nucleus
nTPM: 1712.1
2220 Male, age 76, midline 1712.1
Periaquaductal grey, anterior
nTPM: 1530.9
1947 Male, age 18, unknown 1569.3
2502 Female, age 75, unknown 1533.1
1795 Male, age 51, unknown 1490.4
Periaquaductal grey, dorsal
nTPM: 1508.4
2850 Male, age 76, both hemispheres 1699.4
2464 Female, age 72, unknown 1576.7
1831 Male, age 72, unknown 1486.0
1840 Male, age 53, unknown 1271.7
Periaquaductal grey, lateral
nTPM: 1662.4
2140 Male, age 76, both hemispheres 1829.0
2053 Male, age 18, unknown 1592.7
2272 Male, age 74, both hemispheres 1565.4
Pretectal area
nTPM: 1848.0
2667 Female, age 75, unknown 2457.7
1817 Female, age 42, unknown 2128.8
2316 Male, age 76, right hemisphere 1982.6
1815 Male, age 53, unknown 1979.5
2273 Male, age 74, both hemispheres 1972.3
1944 Female, age 72, unknown 1800.5
2007 Male, age 72, unknown 1781.7
2407 Male, age 75, both hemispheres 1760.3
2224 Female, age 72, unknown 1574.8
2825 Male, age 18, unknown 1474.3
1816 Male, age 51, unknown 1415.0
Red nucleus
nTPM: 2622.4
1904 Male, age 53, unknown 3110.3
2823 Male, age 76, right hemisphere 3006.5
2769 Male, age 72, unknown 2962.0
1865 Male, age 51, unknown 2939.5
2227 Male, age 72, unknown 2925.7
1821 Female, age 72, unknown 2845.6
2503 Female, age 72, unknown 2732.2
1954 Female, age 42, unknown 2681.7
2785 Male, age 18, unknown 2673.7
2725 Female, age 75, unknown 2063.4
2588 Male, age 74, left hemisphere 1872.1
2584 Male, age 75, left hemisphere 1655.5
Substantia nigra
nTPM: 1683.7
1889 Female, age 72, unknown 2107.8
1851 Male, age 51, unknown 2052.9
2699 Male, age 18, unknown 1999.9
1916 Female, age 42, unknown 1776.8
2583 Male, age 75, right hemisphere 1730.9
2590 Female, age 75, unknown 1695.5
2409 Female, age 72, unknown 1686.3
1941 Male, age 53, unknown 1395.9
2241 Male, age 72, unknown 1323.4
2665 Male, age 74, both hemispheres 1068.0
Superior colliculus
nTPM: 1825.7
1995 Male, age 72, unknown 2569.3
1913 Female, age 42, unknown 2285.5
2087 Female, age 72, unknown 1843.2
1796 Male, age 53, unknown 1811.2
2587 Male, age 74, left hemisphere 1803.3
1895 Male, age 76, right hemisphere 1748.4
1839 Male, age 51, unknown 1705.5
2668 Female, age 75, unknown 1619.3
2664 Male, age 75, both hemispheres 1455.5
2261 Male, age 18, unknown 1415.5
Ventral tegmental area
nTPM: 1819.0
2223 Female, age 72, unknown 2007.9
2410 Female, age 72, unknown 1970.8
1915 Female, age 42, unknown 1937.6
2021 Male, age 53, unknown 1689.2
2218 Male, age 76, both hemispheres 1678.8
1942 Male, age 51, unknown 1629.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 3289.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3289.6
Samples: 139

Max nTPM: 8717.4
Min nTPM: 747.3
Std nTPM: 1293.4
Median nTPM: 3092.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 8717.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 7518.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 6740.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 6495.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 6478.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 6449.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 6233.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 5930.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 5612.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 5502.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 5384.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 6870.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6870.6
FF:10158-103A5 76 years, female 6870.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 3469.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 3469.3
Samples: 4

Max nTPM: 4054.6
Min nTPM: 3026.8
Sample A Male 4054.6
Sample B Male 3168.4
Sample C Female 3627.4
Sample D Female 3026.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.7
851 Antisense, RP_Baylor_102986, Mouse strain C57BL/6J (56 days, male) 10.7
852 Antisense, RP_Baylor_102986, Mouse strain C57BL/6J (56 days, male) 8.4

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