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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:2682.3 nTPM
FANTOM5:5100.3 Scaled Tags Per Million
Mouse:1636.2 nTPM
Allen mouse:9.3 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2682.3
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 1799.1
2032 Female, age 42, unknown 2063.5
2497 Male, age 66, unknown 1992.2
2396 Male, age 61, right hemisphere 1341.6
Centromedial thalamic nucleus
nTPM: 2682.3
2279 Female, age 85, left hemisphere 3266.3
2401 Male, age 76, right hemisphere 2098.3
Habenula
nTPM: 1878.1
2276 Male, age 66, unknown 2134.9
2203 Male, age 61, left hemisphere 2081.4
2252 Male, age 62, unknown 1792.7
1957 Male, age 80, both hemispheres 1503.6
Lateral geniculate body
nTPM: 2428.8
2575 Female, age 94, right hemisphere 3412.4
2841 Male, age 80, both hemispheres 2719.1
2399 Male, age 61, left hemisphere 2558.9
2035 Female, age 72, unknown 2501.0
2106 Female, age 67, right hemisphere 2262.9
2659 Male, age 66, unknown 2047.0
2857 Male, age 74, right hemisphere 1990.5
1953 Male, age 62, unknown 1938.8
Lateral thalamic nuclei
nTPM: 2571.2
2573 Female, age 94, left hemisphere 4671.3
2765 Female, age 67, both hemispheres 2573.6
2661 Female, age 72, unknown 2209.8
1903 Male, age 76, left hemisphere 1887.8
2577 Male, age 74, both hemispheres 1513.5
Medial dorsal thalamic nucleus
nTPM: 2162.6
2572 Female, age 94, right hemisphere 4982.9
1859 Male, age 76, both hemispheres 2176.2
2498 Male, age 66, unknown 2141.2
2660 Female, age 72, unknown 2095.3
1930 Female, age 42, unknown 2093.3
2492 Male, age 75, right hemisphere 2058.5
1810 Male, age 48, unknown 2036.5
2576 Male, age 74, both hemispheres 1939.6
2026 Male, age 62, unknown 1867.6
2283 Male, age 80, right hemisphere 1754.4
2402 Female, age 67, both hemispheres 1739.7
1971 Male, age 61, right hemisphere 1680.5
2039 Female, age 72, unknown 1547.5
Medial geniculate body
nTPM: 2076.2
2650 Female, age 94, left hemisphere 3424.9
2217 Female, age 72, unknown 2195.6
2207 Male, age 80, right hemisphere 2037.5
2657 Male, age 74, right hemisphere 2000.8
2049 Male, age 76, both hemispheres 1957.6
2571 Male, age 75, right hemisphere 1539.9
1811 Female, age 42, unknown 1377.0
Nucleus reuniens
nTPM: 2170.8
2210 Female, age 85, left hemisphere 2990.5
2205 Male, age 80, left hemisphere 2204.7
2212 Female, age 67, left hemisphere 1317.4
Nucleus rhomboideus
nTPM: 2003.4
2280 Female, age 85, left hemisphere 2706.5
2206 Male, age 80, both hemispheres 1790.3
2213 Female, age 67, left hemisphere 1513.4
Posterior thalamic nucleus
nTPM: 2429.7
2649 Female, age 94, both hemispheres 3977.8
2266 Male, age 76, right hemisphere 2132.8
2495 Female, age 67, right hemisphere 1820.3
2655 Male, age 74, right hemisphere 1787.8
Pulvinar
nTPM: 2076.8
1932 Male, age 80, right hemisphere 2596.5
2398 Male, age 61, left hemisphere 2433.9
2724 Male, age 74, right hemisphere 2279.9
2582 Female, age 72, unknown 2167.1
2499 Male, age 66, unknown 2074.8
1899 Female, age 42, unknown 1972.4
2214 Male, age 76, right hemisphere 1963.7
1972 Male, age 62, unknown 1907.4
1929 Male, age 48, unknown 1700.5
2496 Female, age 67, right hemisphere 1671.6
Subthalamic nucleus
nTPM: 2030.2
2056 Female, age 72, unknown 2620.3
2282 Male, age 61, both hemispheres 2495.8
2216 Male, age 48, unknown 2440.5
2124 Male, age 62, unknown 2233.5
2275 Male, age 66, unknown 1868.4
2658 Male, age 74, both hemispheres 1737.2
2779 Female, age 42, unknown 1678.0
2406 Female, age 72, unknown 1168.1
Ventral posterolateral thalamic nucleus
nTPM: 2062.2
2570 Male, age 75, right hemisphere 2622.3
2740 Male, age 76, right hemisphere 2418.0
2197 Male, age 80, both hemispheres 2217.5
2581 Female, age 72, unknown 1856.4
2397 Male, age 61, right hemisphere 1780.0
2578 Male, age 74, both hemispheres 1479.0
Ventral posteromedial thalamic nucleus
nTPM: 1991.4
2281 Male, age 75, right hemisphere 2729.3
2758 Male, age 80, both hemispheres 2207.7
2127 Male, age 76, right hemisphere 2153.1
2202 Male, age 61, left hemisphere 1529.1
2653 Male, age 74, both hemispheres 1337.7
Ventral thalamic nuclei
nTPM: 2139.3
2204 Male, age 80, both hemispheres 2463.9
2291 Female, age 72, unknown 2341.6
2858 Female, age 72, unknown 2338.0
1860 Male, age 76, both hemispheres 2296.3
2580 Male, age 66, unknown 2200.5
1845 Male, age 48, unknown 2102.2
2285 Male, age 62, unknown 2024.1
2652 Male, age 74, left hemisphere 1779.7
1912 Female, age 42, unknown 1707.8
Zona incerta
nTPM: 1735.5
2215 Male, age 66, unknown 2164.8
2208 Male, age 80, right hemisphere 1832.9
2822 Male, age 74, right hemisphere 1632.0
2663 Female, age 72, unknown 1546.1
2403 Male, age 62, unknown 1501.6

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

5100.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 5100.3
FF:10154-103A1 76 years, female 5100.3

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1636.2
Mouse sample Sample description nTPM
Thalamus
nTPM: 1636.3
Samples: 4

Max nTPM: 1944.7
Min nTPM: 1322.7
Sample A Male 1503.5
Sample B Male 1944.7
Sample C Female 1774.1
Sample D Female 1322.7

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

9.3
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 9.3
851 Antisense, RP_Baylor_102986, Mouse strain C57BL/6J (56 days, male) 9.3
852 Antisense, RP_Baylor_102986, Mouse strain C57BL/6J (56 days, male) 6.7

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