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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:3326.0 nTPM
HPA Brain:2189.2 nTPM
GTEx:3326.0 nTPM
FANTOM5:6602.9 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2189.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 2189.2
1981 Female, age 72, midline 2665.7
2194 Female, age 79, both hemispheres 2189.8
2816 Male, age 47, midline 2154.1
2048 Male, age 55, midline 2146.8
2565 Male, age 75, midline 1789.5
Cervical spinal cord, dorsal horn
nTPM: 2094.6
2296 Male, age 66, both hemispheres 2957.2
2173 Female, age 72, unknown 2667.7
2069 Male, age 47, both hemispheres 2104.5
1877 Male, age 55, unknown 1909.7
2721 Male, age 90, both hemispheres 1685.8
2297 Male, age 75, both hemispheres 1242.7
Cervical spinal cord, ventral horn
nTPM: 2156.1
2098 Female, age 72, unknown 3394.9
2068 Male, age 55, unknown 2279.0
2295 Male, age 66, both hemispheres 2126.6
2820 Female, age 79, both hemispheres 1878.9
2809 Male, age 90, both hemispheres 1788.6
2480 Male, age 75, both hemispheres 1468.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3326.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 3326.0
Samples: 159

Max nTPM: 16163.8
Min nTPM: 915.8
Std nTPM: 1459.7
Median nTPM: 3116.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 16163.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 9641.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 5802.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 5497.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 5295.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 5259.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 5058.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 4982.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 4945.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 4903.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 4709.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 4600.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 4538.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 4519.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 4505.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 4492.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 4488.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 4476.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 4427.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 4407.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 4393.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 4331.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 4295.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 4292.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 4291.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 4284.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 4180.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 4166.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 4089.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 4065.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 4028.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 4025.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 3984.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 3952.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 3927.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 3927.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 3909.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 3862.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 3850.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 3846.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 3843.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 3831.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 3825.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 3798.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 3778.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 3752.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 3749.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 3707.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 3691.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 3683.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 3656.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 3616.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 3595.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 3581.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 3572.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 3547.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 3536.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 3526.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 3490.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 3473.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 3443.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 3435.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 3382.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 3375.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 3353.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 3341.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 3329.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 3323.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 3309.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 3307.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 3288.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 3248.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 3248.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 3241.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 3211.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 3192.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 3179.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 3129.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 3119.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 3116.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 3114.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 3104.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 3096.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 3083.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 3075.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 3074.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 3056.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 3048.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 3037.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 3003.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 2996.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 2966.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 2941.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2940.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 2928.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 2925.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 2912.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 2898.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 2896.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 2883.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 2879.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 2871.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 2840.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 2837.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 2803.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 2795.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 2773.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 2772.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 2754.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 2748.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2669.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 2668.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 2662.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 2647.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 2631.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 2627.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 2614.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 2610.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 2607.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 2600.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 2583.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 2551.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 2539.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 2498.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 2471.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 2463.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 2462.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 2401.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 2398.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 2382.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 2379.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 2372.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 2334.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 2332.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 2325.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 2306.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 2259.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 2251.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 2155.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 2137.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 2098.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 2064.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 2058.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 1985.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1973.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1933.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1928.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1920.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 1916.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1868.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1783.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 1742.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1680.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1632.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1608.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1508.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1503.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1447.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 915.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

6602.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 6602.9
FF:10181-103D1 60 years, female 8874.1
FF:10159-103A6 76 years, female 4331.6

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