MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:428.8 nTPM
HPA Brain:234.2 nTPM
GTEx:428.8 nTPM
FANTOM5:10.8 Scaled Tags Per Million
Pig:226.3 nTPM
Mouse:219.5 nTPM
Allen mouse:16.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 234.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 212.1
2666 Male, age 74, left hemisphere 251.1
1870 Female, age 42, unknown 232.9
2411 Female, age 72, unknown 228.0
1830 Male, age 51, unknown 214.0
1833 Male, age 53, unknown 214.0
2586 Male, age 75, left hemisphere 211.4
2219 Male, age 76, both hemispheres 199.1
1827 Male, age 72, unknown 192.0
2828 Female, age 72, unknown 190.5
2019 Male, age 18, unknown 188.1
Dorsal raphe nucleus
nTPM: 187.7
2016 Female, age 72, unknown 209.9
2750 Male, age 76, both hemispheres 194.4
1828 Male, age 53, unknown 187.8
2047 Male, age 72, unknown 185.8
2298 Female, age 72, unknown 160.7
Inferior colliculus
nTPM: 206.8
1890 Male, age 53, unknown 223.5
2849 Male, age 72, unknown 216.7
1848 Female, age 42, unknown 214.0
2097 Female, age 72, unknown 173.1
Median raphe nucleus
nTPM: 209.2
2220 Male, age 76, midline 209.2
Periaquaductal grey, anterior
nTPM: 202.2
2502 Female, age 75, unknown 215.4
1947 Male, age 18, unknown 210.4
1795 Male, age 51, unknown 180.9
Periaquaductal grey, dorsal
nTPM: 205.3
2850 Male, age 76, both hemispheres 226.5
1840 Male, age 53, unknown 208.6
1831 Male, age 72, unknown 193.3
2464 Female, age 72, unknown 193.0
Periaquaductal grey, lateral
nTPM: 189.9
2053 Male, age 18, unknown 215.7
2140 Male, age 76, both hemispheres 207.9
2272 Male, age 74, both hemispheres 146.0
Pretectal area
nTPM: 186.3
2825 Male, age 18, unknown 214.6
1815 Male, age 53, unknown 212.1
2407 Male, age 75, both hemispheres 204.1
2316 Male, age 76, right hemisphere 194.0
1817 Female, age 42, unknown 188.8
2224 Female, age 72, unknown 185.7
2007 Male, age 72, unknown 182.4
1944 Female, age 72, unknown 174.2
1816 Male, age 51, unknown 170.8
2667 Female, age 75, unknown 168.4
2273 Male, age 74, both hemispheres 154.0
Red nucleus
nTPM: 234.2
2503 Female, age 72, unknown 289.9
1865 Male, age 51, unknown 269.3
2588 Male, age 74, left hemisphere 267.3
2584 Male, age 75, left hemisphere 245.9
1904 Male, age 53, unknown 232.5
2725 Female, age 75, unknown 229.7
2769 Male, age 72, unknown 219.7
2227 Male, age 72, unknown 217.5
1821 Female, age 72, unknown 215.9
1954 Female, age 42, unknown 215.1
2823 Male, age 76, right hemisphere 213.1
2785 Male, age 18, unknown 194.8
Substantia nigra
nTPM: 222.0
2590 Female, age 75, unknown 249.5
2409 Female, age 72, unknown 248.5
2699 Male, age 18, unknown 244.7
2241 Male, age 72, unknown 239.5
2665 Male, age 74, both hemispheres 235.4
1851 Male, age 51, unknown 217.8
2583 Male, age 75, right hemisphere 215.8
1889 Female, age 72, unknown 210.3
1941 Male, age 53, unknown 188.0
1916 Female, age 42, unknown 170.0
Superior colliculus
nTPM: 204.6
1913 Female, age 42, unknown 245.1
2587 Male, age 74, left hemisphere 244.0
1995 Male, age 72, unknown 239.9
1839 Male, age 51, unknown 210.0
1895 Male, age 76, right hemisphere 198.9
2668 Female, age 75, unknown 187.0
1796 Male, age 53, unknown 186.8
2664 Male, age 75, both hemispheres 184.5
2261 Male, age 18, unknown 176.0
2087 Female, age 72, unknown 173.6
Ventral tegmental area
nTPM: 209.2
2223 Female, age 72, unknown 224.1
2410 Female, age 72, unknown 216.1
1942 Male, age 51, unknown 210.8
2021 Male, age 53, unknown 206.9
1915 Female, age 42, unknown 205.9
2218 Male, age 76, both hemispheres 191.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 428.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 428.8
Samples: 139

Max nTPM: 827.1
Min nTPM: 203.7
Std nTPM: 133.7
Median nTPM: 396.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 827.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 805.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 766.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 724.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 708.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 708.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 706.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 698.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 692.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 671.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 664.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 10.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.8
FF:10158-103A5 76 years, female 10.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 226.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 200.0
Samples: 4

Max nTPM: 214.9
Min nTPM: 190.2
Sample A Female 214.9
Sample B Female 190.2
Sample C Male 199.6
Sample D Male 195.1
Midbrain
nTPM: 226.3
Samples: 4

Max nTPM: 290.3
Min nTPM: 193.0
Sample A Female 290.3
Sample B Female 222.8
Sample C Male 199.0
Sample D Male 193.0
Periaqueductal gray
nTPM: 201.5
Samples: 3

Max nTPM: 217.6
Min nTPM: 177.2
Sample B Female 209.7
Sample C Male 217.6
Sample D Male 177.2
Superior colliculi
nTPM: 221.1
Samples: 4

Max nTPM: 233.8
Min nTPM: 212.0
Sample A Female 233.8
Sample B Female 220.9
Sample C Male 212.0
Sample D Male 217.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 219.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 219.5
Samples: 4

Max nTPM: 228.3
Min nTPM: 209.6
Sample A Male 224.8
Sample B Male 215.4
Sample C Female 228.3
Sample D Female 209.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 16.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.4
71232800 Antisense, RP_050503_02_A03, Mouse strain C57BL/6J (56 days, male) 16.4

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