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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:562.5 nTPM
GTEx:562.5 nTPM
FANTOM5:12.9 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA001609Antibody HPA001666Antibody CAB010894
Squamous epithelial cells HighMediumHigh






VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

562.5
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 562.5
Samples: 156

Max nTPM: 1049.5
Min nTPM: 291.9
Std nTPM: 121.5
Median nTPM: 539.7
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 1049.5
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 929.5
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 895.4
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 852.1
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 850.7
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 821.9
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 776.6
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 776.5
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 765.0
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 761.9
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 746.9
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 731.0
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 729.7
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 726.0
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 720.8
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 714.7
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 708.7
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 703.7
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 703.5
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 703.0
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 696.7
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 691.8
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 689.8
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 689.3
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 688.0
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 680.2
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 677.5
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 669.1
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 668.2
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 667.3
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 663.0
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 659.8
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 656.6
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 648.4
GTEX-16NPV-2526-SM-6M483 50-59 years, female 643.4
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 643.1
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 635.5
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 634.6
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 634.4
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 631.7
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 630.1
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 629.1
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 627.9
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 627.0
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 626.6
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 626.0
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 621.9
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 621.8
GTEX-14PKU-1326-SM-6871B 40-49 years, female 618.9
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 618.5
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 611.7
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 596.9
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 590.6
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 588.6
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 587.6
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 585.5
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 584.2
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 584.0
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 582.1
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 579.3
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 578.2
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 577.4
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 576.8
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 576.6
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 576.1
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 575.3
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 573.8
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 572.8
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 572.5
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 570.4
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 567.4
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 567.3
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 565.9
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 562.9
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 558.2
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 546.4
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 541.0
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 539.8
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 539.6
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 536.0
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 532.2
GTEX-1C475-0526-SM-793AC 40-49 years, female 531.9
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 531.6
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 531.6
GTEX-S341-1226-SM-4AD5S 40-49 years, female 529.2
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 528.2
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 526.5
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 526.3
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 524.1
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 522.2
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 520.7
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 519.3
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 518.6
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 518.1
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 517.1
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 515.8
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 511.7
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 510.8
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 504.6
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 503.8
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 502.1
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 499.9
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 497.6
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 495.2
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 494.0
GTEX-QCQG-1226-SM-48U23 50-59 years, female 493.3
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 492.0
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 490.0
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 489.6
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 487.9
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 486.3
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 485.1
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 483.6
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 482.8
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 482.2
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 478.6
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 476.3
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 475.6
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 474.7
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 472.5
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 469.5
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 465.0
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 463.8
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 463.8
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 460.1
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 458.5
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 456.2
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 455.5
GTEX-11I78-2026-SM-5987C 50-59 years, female 454.6
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 454.6
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 453.6
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 453.6
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 451.4
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 446.0
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 442.8
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 438.3
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 437.0
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 436.9
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 436.7
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 435.2
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 429.1
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 418.4
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 416.9
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 414.2
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 410.8
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 403.3
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 399.4
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 399.1
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 396.4
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 393.7
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 388.5
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 375.6
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 368.4
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 360.9
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 338.8
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 291.9
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

12.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 12.9
FF:10204-103F6 68 years, female 12.9

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