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HNRNPA1
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:425.7 nTPM
HPA:425.7 nTPM
GTEx:421.6 nTPM
FANTOM5:16.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA001609Antibody HPA001666Antibody CAB010894
Glandular cells HighHighHigh





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

425.7
overview
Male, age 65
Small intestine sample 232
nTPM: 504.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 381.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 395.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 420.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

421.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 421.6
Samples: 187

Max nTPM: 934.3
Min nTPM: 214.9
Std nTPM: 113.1
Median nTPM: 403.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 934.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 890.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 720.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 705.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 691.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 648.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 640.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 639.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 639.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 637.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 637.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 613.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 606.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 594.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 594.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 590.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 588.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 578.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 577.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 559.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 556.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 543.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 543.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 543.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 543.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 540.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 534.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 533.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 533.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 530.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 529.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 523.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 521.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 518.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 515.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 512.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 511.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 509.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 500.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 499.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 498.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 496.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 494.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 491.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 484.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 479.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 474.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 473.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 472.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 469.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 466.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 462.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 461.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 461.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 461.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 457.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 457.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 456.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 456.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 453.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 451.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 445.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 440.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 439.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 438.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 435.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 430.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 429.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 429.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 426.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 425.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 423.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 422.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 420.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 420.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 418.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 418.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 418.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 418.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 417.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 417.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 416.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 415.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 415.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 413.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 412.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 409.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 408.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 407.8
GTEX-14PKU-1626-SM-6871C 40-49 years, female 407.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 406.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 405.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 404.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 403.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 402.7
GTEX-1192X-2526-SM-59868 50-59 years, male 401.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 400.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 400.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 399.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 399.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 398.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 396.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 395.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 394.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 390.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 390.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 387.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 386.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 384.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 383.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 381.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 381.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 381.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 380.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 379.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 378.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 378.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 377.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 376.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 375.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 374.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 373.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 372.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 371.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 366.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 365.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 364.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 364.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 362.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 362.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 361.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 360.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 359.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 356.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 355.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 354.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 353.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 348.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 347.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 342.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 342.3
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 340.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 340.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 340.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 338.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 338.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 336.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 335.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 329.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 329.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 328.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 326.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 325.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 325.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 322.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 320.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 320.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 318.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 317.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 316.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 316.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 314.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 314.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 308.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 307.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 306.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 306.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 303.0
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 299.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 299.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 295.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 293.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 292.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 281.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 280.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 277.8
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 275.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 273.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 273.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 259.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 257.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 257.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 249.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 249.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 233.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 220.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 214.9
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

16.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 16.9
FF:10024-101D6 15,40,85 years, mixed 16.9

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